Witryna8 lut 2024 · However, a doubled monoploid, DM1–3516 R44 (S. tuberosum group Phureja, 2n = 2x = 24, referred to as DM 1–3) with its homozygous and well-sequenced genome has been a valuable source for genetic, cytogenetic, and epigenetic studies. DM 1–3 and its derived tetraploids provide an ideal system and allow us to study the … WitrynaACN recovered by CNH, can be obtained by r2q function, using the RCN data and the CNH estimates of the tumor purity, the tumor ploidy as the input. acn_cnh = r2q (r, cnh$purity[1], cnh$ploidy[1]) The ACN profile of tumor, recovered by CNH can be plotted by plot_profile function.

CYP1B1-AS1 DepMap Gene Summary

WitrynaView details Expression & CN Expression Copy Number log2 (relative to ploidy + 1) Expression: RNASeq files are aligned with STAR and quantified with RSEM, then TPM-normalized. Reported values are log2 (TPM+1). Copy Number: The relative copy number pipeline used varies by cell line. Witryna28 wrz 2024 · 在2倍体里，假设纯度是100%，一个纯合样本的CN增加了1，那么拷贝率就变成了2/3,用log2计算的话就是log(3/2)=0.585。相反，如果CN减少了1，那么拷贝率 … princeton high school powerschool

NDUFA13 DepMap Gene Summary

WitrynaThe relative copy number pipeline used varies by cell line. For around 1000 lines, Sanger WES data was used, while for around 700 lines, Broad WES data was used. … WitrynaRNASeq files are aligned with STAR and quantified with RSEM, then TPM-normalized. Reported values are log2(TPM+1). Copy Number: The relative copy number pipeline … WitrynaCopy Number log2 (relative to ploidy + 1) View details in the Characterization tab Mutations Mutation 21Q4 Public # of cell lines View details in the Characterization tab Predictability CRISPR (DepMap 21Q4 Public+Score, Chronos): 7.85th percentile RNAi (Achilles+DRIVE+Marcotte, DEMETER2): 88.3th percentile Prediction Accuracy pluckebaum houseboats for sale